Publications

This website only contains publications that have been produced within the framework of this group. For a detailed bibliography of the individual members see here or there.

135 entries « 3 of 3 »

2021

textbfDörpinghaus, Jens; Schaaf, Sebastian; Weil, Vera; Hübenthal, Tobias

An efficient approach towards the generation and analysis of interoperable clinical data in a knowledge graph Proceedings Article

In: Ganzha, Maria; Maciaszek, Leszek; Paprzycki, Marcin; Slezak, Dominik (Ed.): Proceedings of the 16th Conference on Computer Science and Intelligence Systems, pp. 59–68, IEEE, 2021.

Links | BibTeX | Tags: conference

textbfDörpinghaus, Jens; Düing, Carsten

Automated creation of parallel Bible corpora with cross-lingual semantic concordance Proceedings Article

In: 16th Conference on Computer Science and Intelligence Systems (FedCSIS), pp. 111-114, 2021.

Links | BibTeX | Tags: conference

2020

Dörpinghaus, Jens; Schaaf, Sebastian; Weil, Vera

Java für die Life Sciences: eine Einführung in die angewandte Bioinformatik Book

O'Reilly, 2020.

BibTeX | Tags: book

Dörpinghaus, Jens; Stefan, Andreas

Semantic graph queries on linked data in knowledge graphs Proceedings Article

In: The Workshop on Computational Optimization, pp. 81–102, Springer 2020.

Links | BibTeX | Tags: book

Dörpinghaus, Jens

Neue Forschungen zur Apostelgeschichte Zwischen Tradition und interdisziplinärem Aufbruch Journal Article

In: BeTh, vol. 4, pp. 127–146, 2020.

BibTeX | Tags: journal

Li, Roman; Zupanic, Anze; Talikka, Marja; Belcastro, Vincenzo; Madan, Sumit; Dörpinghaus, Jens; vom Berg, Colette; Szostak, Justyna; Martin, Florian; Peitsch, Manuel C

Systems toxicology approach for testing chemical cardiotoxicity in larval zebrafish Journal Article

In: Chemical research in toxicology, vol. 33, no. 10, pp. 2550–2564, 2020.

Links | BibTeX | Tags: journal

textbfDörpinghaus, Jens; Stefan, Andreas

Optimization of Retrieval Algorithms on Large Scale Knowledge Graphs Proceedings Article

In: Agarwal, Shivani; Barrell, D. N.; Solanki, Vijender Kumar (Ed.): Proceedings of the 2020 Federated Conference on Computer Science and Information Systems, pp. 227–236, IEEE, 2020.

Links | BibTeX | Tags: conference

textbfDörpinghaus, Jens; Jacobs, Marc

Knowledge Detection and Discovery using Semantic Graph Embeddings on Large Knowledge Graphs generated on Text Mining Results Proceedings Article

In: Agarwal, Shivani; Barrell, D. N.; Solanki, Vijender Kumar (Ed.): Proceedings of the 2020 Federated Conference on Computer Science and Information Systems, pp. 169–178, IEEE, 2020.

Links | BibTeX | Tags: conference

Dörpinghaus, Jens; Stefan, Andreas

Optimization of Retrieval Algorithms on Large Scale Knowledge Graphs Miscellaneous

2020.

Links | BibTeX | Tags: preprint

Dörpinghaus, Jens; Stefan, Andreas; Schultz, Bruce; Jacobs, Marc

Towards context in large scale biomedical knowledge graphs Miscellaneous

2020.

Links | BibTeX | Tags: preprint

2019

Dörpinghaus, Jens; Schrader, Rainer

Solving Sorting of Rolling Stock Problems Utilizing Pseudochain Structures in Graphs Proceedings Article

In: Recent Advances in Computational Optimization: Results of the Workshop on “Computational Optimization” and “Numerical Search and Optimization” 2018, pp. 45–59, Springer 2019.

Links | BibTeX | Tags: book

Dörpinghaus, Jens; Düing, Carsten; Weil, Vera

Utilizing Minimum Set-Cover Structures with Several Constraints for Knowledge Discovery on Large Literature Databases Proceedings Article

In: The Workshop on Computational Optimization, pp. 49–69, Springer 2019.

Links | BibTeX | Tags: book

textbfDörpinghaus, Jens; Düing, Carsten; Weil, Vera

A Minimum Set-Cover Problem with several constraints Proceedings Article

In: Ganzha, Maria; Maciaszek, Leszek; Paprzycki, Marcin (Ed.): Proceedings of the 2019 Federated Conference on Computer Science and Information Systems, pp. 115–122, IEEE, 2019.

Links | BibTeX | Tags: conference

textbfDörpinghaus, Jens; Stefan, Andreas

Knowledge Extraction and Applications utilizing Context Data in Knowledge Graphs Proceedings Article

In: 2019 Federated Conference on Computer Science and Information Systems (FedCSIS), pp. 265-272, 2019.

Links | BibTeX | Tags: conference

Dörpinghaus, Jens; Jacobs, Marc

Semantic Knowledge Graph Embeddings for biomedical Research: Data Integration using Linked Open Data Journal Article

In: Proceedings of the Posters and Demo Track of the 15th International Conference on Semantic Systems co-located with 15th International Conference on Semantic Systems, 2019.

BibTeX | Tags: weiteres

Dörpinghaus, Jens; Jacobs, Marc; Hofmann-Apitius, Martin

Context graph for biomedical research data: A fair and open approach towards reproducible research in Medicine Miscellaneous

2019, (MAQC2019).

BibTeX | Tags: poster

Dörpinghaus, Jens; Apke, Alexander; Lage-Rupprecht, Vanessa; Stefan, Andreas

Data Exploration and Validation on dense knowledge graphs for biomedical research Miscellaneous

2019.

Links | BibTeX | Tags: preprint

2018

Dörpinghaus, Jens

Pseudostabile Mengen in Graphen Book

Fraunhofer Verlag, 2018, (Dissertation Universität zu Köln).

Links | BibTeX | Tags: book

Dörpinghaus, Jens; Schaaf, Sebastian; Jacobs, Marc

Soft document clustering using a novel graph covering approach Journal Article

In: BioData Mining, vol. 11, pp. 1–20, 2018.

Links | BibTeX | Tags: journal

Adams, Tim; textbfDörpinghaus, Jens; Jacobs, Marc; Steinhage, Volker

Automated lung tumor detection and diagnosis in CT Scans using texture feature analysis and SVM Proceedings Article

In: Ganzha, M.; Maciaszek, L.; Paprzycki, M. (Ed.): Communication Papers of the 2018 Federated Conference on Computer Science and Information Systems, pp. 13–20, PTI, 2018.

Links | BibTeX | Tags: conference

textbfDörpinghaus, Jens; Darms, Johannes; Jacobs, Marc

What was the Question? a Systematization of Information Retrieval and NLP Problems Proceedings Article

In: Federated Conference on Computer Science and Information Systems (FedCSIS), pp. 471-478, 2018.

BibTeX | Tags: conference

textbfDörpinghaus, Jens; Schrader, Rainer

A Graph-Theoretic Approach to the Train Marshalling Problem Proceedings Article

In: Federated Conference on Computer Science and Information Systems (FedCSIS), pp. 227-231, 2018.

BibTeX | Tags: conference

Dörpinghaus, Jens; Stenschke, Christoph W.

Ein kollaborativer Workflow zur historischen Netzwerkanalyse mit Open Source Software Journal Article

In: FrOSCon 2018. Science Track FrOSCon, 2018.

Links | BibTeX | Tags: weiteres

Li, Roman; Zupanic, Anze; Talikka, Marja; Belcastro, Vincenzo; Madan, Sumit; Dörpinghaus, Jens; vom Berg, Colette; Szostak, Justyna; Martin, Florian; Peitsch, Manuel C

Systems toxicology approach for the assessment of zebrafish cardiotoxicity Journal Article

In: EUROTOX 2018, Toxicology Letters 295, 2018.

BibTeX | Tags: weiteres

Darms, Johannes; Dörpinghaus, Jens

Improving Document Retrieval with a clustering based relevance Feedback System Journal Article

In: Proceedings of the 11th IADIS International Conference on Information Systems, 2018.

BibTeX | Tags: weiteres

Dörpinghaus, Jens; Jacobs, Marc; Fluck, Juliane

Graph based Discovery in biomedical Information Systems connecting scientific Texts with structured Expert Knowledge. Journal Article

In: Proceedings of the 11th IADIS International Conference on Information Systems, 2018.

BibTeX | Tags: weiteres

Jacobs, Marc; Hodapp, Sven; Dörpinghaus, Jens

SDA: Towards a novel knowledge discovery model for information systems Journal Article

In: Proceedings of the 11th IADIS International Conference on Information Systems, 2018.

BibTeX | Tags: weiteres

Dörpinghaus, Jens; Kodamullil, Alpha Tom; Madan, Sumit

Knowledge Discovery on Biomedical Literature: Validating and Quality Control on Cause and Effect Networks Miscellaneous

2018, (SWAT4HCLS 2018).

BibTeX | Tags: poster

Dörpinghaus, Jens; Kodamullil, Alpha Tom

An Alzheimer’s Landscape: Validating Cause and Effect Networks and Knowledge Discovery on MEDLINE Miscellaneous

2018, (ICSB).

BibTeX | Tags: poster

Dörpinghaus, Jens; Stenschke, Christoph

Early Christianity in Acts 1-12: A Social Network Perspective Miscellaneous

2018, (GBFE M&D Seminar).

BibTeX | Tags: poster

Dörpinghaus, Jens; Schaaf, Sebastian; Jacobs, Marc

DocClustering: An implementation of the novel PS-Document Clustering algorithm Miscellaneous

2018.

Links | BibTeX | Tags: preprint

2017

Madan, Sumit; Szostak, Justyna; Dörpinghaus, Jens; Hoeng, Julia; Fluck, Juliane

Overview of BEL track: extraction of complex relationships and their conversion to BEL Proceedings Article

In: Proceedings of the BioCreative VI workshop, 2017.

BibTeX | Tags: conference

textbfDörpinghaus, Jens; Schaaf, Sebastian; Fluck, Juliane; Jacobs, Marc

Document clustering using a graph covering with pseudostable sets Proceedings Article

In: Federated Conference on Computer Science and Information Systems (FedCSIS), pp. 329-338, 2017.

Links | BibTeX | Tags: conference

Szonastak, Julia; Madan, Sumit; Hayes, Wilem; Dörpinghaus, Jens; others,

Recent Improvements of the BEL Information Extracion workFlow (BELIEF) for Biomedical Text Mining and Curation Miscellaneous

2017, (Biocuration).

BibTeX | Tags: poster

2016

Schaaf, Sebastian; Zimmermann, Marc; Hodapp, Sven; Dörpinghaus, Jens

Semantic technologies for the rapid generation of mechanistic models in neurodegenerative diseases Miscellaneous

2016, (Bioinformatics for Human Health and Disease).

BibTeX | Tags: poster

135 entries « 3 of 3 »